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McGenus: A Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
McGenus Monte Carlo algorithm RNA secondary structures pseudoknots
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2012/4/28
We present McGenus, an algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. McGenus can treat...
TT2NE: A novel algorithm to predict RNA secondary structures with pseudoknots
algorithm predict RNA secondary structures
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2010/11/15
We present TT2NE, a new algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. TT2NE guarantee...
RNA secondary structures, polygon dissections and clusters
RNA secondary structures polygon dissections clusters
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2010/11/16
We show that the notion of induction introduced by Cassaigne, Ferenczi and Zamboni for trees of relations arising in the context of interval exchange relations can be generalised to the case of an arb...