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Jerarca: Efficient Analysis of Complex Networks Using Hierarchical Clustering
Jerarca Efficient Analysis of Complex Networks Hierarchical Clustering Molecular Networks
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2012/5/2
How to extract useful information from complex biological networks is a major goal in many fields, especially in genomics and proteomics. We have shown in several works that iterative hierarchical clu...
Pattern formation in a cell based auxin transport model with numerical bifurcation analysis
Pattern formation cell auxin transport model numerical bifurcation analysis
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2012/2/28
Transport models of growth hormones can be used to reproduce the hormone accumulations that occur in plant organs. Mostly, these accumulation patterns are calculated using time step methods, even thou...
Analysis of noise-induced bistability in Michaelis Menten single-step enzymatic cycle
noise-induced bistability Michaelis Menten single-step enzymatic cycle
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2011/8/11
Abstract: In this paper we study noise-induced bistability in a specific circuit with many biological implications, namely a single-step enzymatic cycle described by Michaelis Menten equations with qu...
Computing fluxes and chemical potential distributions in biochemical networks: energy balance analysis of the human red blood cell
Metabolioc networks energy balance analysis thermodynamic efficiency
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2011/8/16
Abstract: The analysis of non-equilibrium steady states of biochemical reaction networks relies on finding the configurations of fluxes and chemical potentials satisfying stoichiometric (mass balance)...
Stochastic analysis of a miRNA-protein toggle switch
Toggle switch, chemical master equation, stochastic versus deterministic, biochemical reactions
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2011/9/5
Within systems biology there is an increasing interest in the stochastic behavior of genetic and biochemical reaction networks. An appropriate stochastic description is provided by the chemical master...
Wavelet analysis of corneal endothelial electrical potential difference reveals cyclic operation of the secretory mechanism
epithelial transport-electro-osmosis-electrophysiology
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2011/9/2
There is evidence that the electrical potential difference of corneal endothelium (TEPD) is related electro-osmotically to fluid transport. Hence, determination of the TEPD would serve as a measure of...
Genetic and Economic Analysis for the Relationship between Udder Health and Milk Production Traits in Friesian Cows
Somatic Cell Count Udder Traits Mastitis Genetic Parameters Economic Milk Losses
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2016/5/9
A total of 4,752 monthly lactation records of Friesian cows during the period from 2000 to 2005 were used to estimate genetic parameters and to determine the effect of udder health on milk production ...
Proteomic Analysis of Bovine Muscle Satellite Cells during Myogenic Differentiation
Bovine Satellite Cells Depot Proteome Myogenesis
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2016/5/9
The aim of this study was to analyze the proteome expression of bovine satellite cells from longissimus dorsi (LD), deep pectoral (DP) and semitendinosus (ST) muscle depots during in vitro myogenic di...
Genetic Analysis of Pre-weaning and Post-weaning Growth Traits of Mecheri Sheep under Dry Land Farming Conditions
Mecheri Sheep Growth Rate Heritability Repeatability
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2016/5/6
Data on 2,365 Mecheri sheep (1,201 males and 1,164 females), maintained at the Mecheri Sheep Research Station, Pottaneri, India, and recorded between 1979 and 2006, were analysed to study the growth&#...
Proteomic Analysis of Bovine Longissimus Muscle Satellite Cells during Adipogenic Differentiation
2-DE Satellite Cells Adipogenesis Myogenesis Proteome
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2016/5/6
Satellite cells are skeletal muscle progenitor/stem cells that reside between the basal lamina and plasma membranes of skeletal fibers in vivo. These cells can give rise to both myogenic and adipogeni...
SENSITIVITY ANALYSIS OF BIOME-BGC MODEL FOR DRY TROPICAL FORESTS OF VINDHYAN HIGHLANDS, INDIA
Biome-BGC model Dry deciduous forest Net primary productivity Sensitivity index Vindhyan highlands
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2014/5/6
A process-based model BIOME-BGC was run for sensitivity analysis to see the effect of ecophysiological parameters on net primary production (NPP) of dry tropical forest of India. The sensitivity test ...
Comparative Proteomic Analysis of Changes in the Bovine Whey Proteome during the Transition from Colostrum to Milk
Bovine Milk Whey Protein Colostrum Milk Two Dimension Electrophoresis Mass Spectrometry
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2016/5/6
Bovine whey protein expression patterns of colostrum are much different from that of milk. Moreover, bovine colostrum is an important source of protective, nutritional and developmental factors for th...
ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra
ADAM Analysis of Discrete Models
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2011/1/5
Motivation: Many biological systems are modeled qualitatively with discrete models, such as probabilistic Boolean networks, logical models, bounded Petri nets, and agent-based models. Simulation is a ...
Pathways of Distinction Analysis: a new technique for multi-SNP analysis of GWAS data
Distinction Analysis technique multi-SNP analysis of GWAS data
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2011/1/5
Genome-wide association studies have become increasingly common due to advances in technology and have permitted the identification of differences in single nucleotide polymorphism (SNP) alleles that ...
Searching for simplicity: Approaches to the analysis of neurons and behavior
the analysis neurons behavior
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2011/1/5
What fascinates us about animal behavior is its richness and complexity, but understanding behavior and its neural basis requires a simpler description. Traditionally, simplification has been imposed ...