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An Application of a Variable Window Discrete Scan Statistic in Molecular Biology
Amino acids Moving sums Product-type approximation Scan statistic
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2015/3/18
In this article a variable window discrete scan statistic is introduced for a
conditional scan statistic. This statistic is used to test the null hypothesis that the
observations are randomly distri...
Analysis of the Time Reversible Born-Oppenheimer Molecular Dynamics
Ab initio molecular dynamics self-consistent field iteration time reversibility
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2014/9/26
We analyze the time reversible Born-Oppenheimer molecular dynamics
(TRBOMD) scheme, which preserves the time reversibility of the Born-Oppenheimer
molecular dynamics even with non-convergent self-co...
An Efficient Multigrid Method for Molecular Mechanics Modeling in Atomic Solids
Multigrid method Linear-scaling algorithm Cauchy-Born rule Nanoindentation.
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2012/8/10
We propose a multigrid method to solve the molecular mechanics model
(molecular dynamics at zero temperature). The Cauchy-Born elasticity model is employed
as the coarse grid operator and the elasti...
A Stochastic Markov Model for Coordinated Molecular Motors
Stochastic Markov Model Coordinated Molecular Motors
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2010/12/28
Many cell functions are accomplished thanks to intracellular transport mechanisms of macromolecules along filaments.
Molecular communication in fluid media: The additive inverse Gaussian noise channel
Molecular communication fluid media additive inverse Gaussian noise channel
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2011/1/17
We consider molecular communication, with information conveyed in the time of release of molecules.The main contribution of this paper is the development of a theoretical foundation for such a communi...
Molecular imaging with X-ray free electron lasers: dream or reality?
Optics (physics.optics) Pattern Formation and Solitons (nlin.PS)
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2010/11/10
X-ray Free Electron Lasers (XFEL) are revolutionary photons sources, whose ultrashort, brilliant pulses are expected to allow single molecule diffraction experiments providing structural information o...
Holonomy reduced dynamics of triatomic molecular systems
Holonomy reduced dynamics triatomic molecular systems
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2010/11/29
Whereas it is easy to reduce the translational symmetry of a molecular system by using, e.g., Jacobi coordinates the situation is much more involved for the rotational symmetry.
Molecular Distributions in Gene Regulatory Dynamics
Stochastic modelling；inducible/repressible operon
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2010/12/16
We show how one may analytically compute the stationary density of the distribution of molecular constituents in populations of cells in the presence of noise arising from either bursting transcriptio...
On the Second Order Slip Reynolds Equation with Molecular Dynamics: Existence and Uniqueness
Reynolds equation Ky-Fan's Lemma Monotonicity techniques
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2008/6/27
In this paper we obtained existence and uniqueness results for the modified second order slip Reynolds equation modeling the performance of the slider head floating over a rotating disk inside a hard...
Propagation of Molecular Chaos by Quantum Systems and the Dynamics of the Curie-Weiss Model
Molecular Chaos Quantum Systems Dynamics the Curie-Weiss Model
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2010/11/1
The propagation of molecular chaos, a tool of classical kinetic theory, is generalized to apply to quantum systems of distinguishable particles. We prove that the Curie-Weiss model of ferromagnetism ...