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Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding
Modeling Spatial Correlation DNA Deformation DNA Allostery Protein Binding
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2014/9/24
We report a study of DNA deformations using a coarsegrained mechanical model and quantitatively interpret the allosteric effects in protein−DNA binding affinity. A recent single-molecule study (...
Aging correlation functions of the interrupted fractional Fokker-Planck propagator
Aging correlation functions the interrupted fractional Fokker-Planck propagator
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2014/9/24
The authors explore aging in a general semi-Markov process with arbitrary waiting time distributions and discuss the role of trapping phenomenon in glasses in determining the waiting time distribution...
Gaussian factorization of hydrodynamic correlation functions and mode-coupling memory kernels
Gaussian factorization hydrodynamic correlation functions mode-coupling memory kernels
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2014/9/24
A simple method to determine mode-coupling memory functions in generalized Langevin equations is obtained by explicitly expressing the random force of the slow hydrodynamic modes in terms of pair inte...