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Stochastic theory of protein synthesis and polysome: ribosome profile on a single mRNA transcript
ribosome traffic, master equation, extremum current hypothesis, distance-headway,TASEP.
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2011/8/29
The process of polymerizing a protein by a ribosome, using a messenger RNA (mRNA) as the corresponding template, is called translation. Ribosome may be regarded as a molecular motor for which the mRNA...
Profile conditional random fields for modeling protein families with structural information
sequence analysis structure prediction fold recognition dynamic programming mean field approximation
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2010/12/2
A statistical model of protein families, called profile conditional random fields (CRFs), is proposed. This model may be regarded as an integration of the profile hidden Markov model (HMM) and the Fin...